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first commit

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  1. +11
    -0
      .classpath
  2. +17
    -0
      .project
  3. +12
    -0
      .settings/org.eclipse.jdt.core.prefs
  4. +466
    -0
      IJ_Props.txt
  5. BIN
      bin/ij/CommandListener.class
  6. BIN
      bin/ij/CompositeImage.class
  7. BIN
      bin/ij/Executer.class
  8. BIN
      bin/ij/IJ$ExceptionHandler.class
  9. BIN
      bin/ij/IJ.class
  10. BIN
      bin/ij/IJEventListener.class
  11. BIN
      bin/ij/ImageJ$ExceptionHandler.class
  12. BIN
      bin/ij/ImageJ.class
  13. BIN
      bin/ij/ImageJApplet.class
  14. BIN
      bin/ij/ImageListener.class
  15. BIN
      bin/ij/ImagePlus$1.class
  16. BIN
      bin/ij/ImagePlus.class
  17. BIN
      bin/ij/ImageStack.class
  18. BIN
      bin/ij/LookUpTable.class
  19. BIN
      bin/ij/Macro.class
  20. BIN
      bin/ij/Menus.class
  21. BIN
      bin/ij/OtherInstance$ImageJInstance.class
  22. BIN
      bin/ij/OtherInstance$Implementation.class
  23. BIN
      bin/ij/OtherInstance.class
  24. BIN
      bin/ij/Prefs.class
  25. BIN
      bin/ij/RecentOpener.class
  26. BIN
      bin/ij/Undo.class
  27. BIN
      bin/ij/VirtualStack.class
  28. BIN
      bin/ij/WindowManager.class
  29. BIN
      bin/ij/gui/Arrow.class
  30. BIN
      bin/ij/gui/ColorChooser.class
  31. BIN
      bin/ij/gui/ColorPanel.class
  32. BIN
      bin/ij/gui/DialogListener.class
  33. BIN
      bin/ij/gui/EllipseRoi.class
  34. BIN
      bin/ij/gui/FreehandRoi.class
  35. BIN
      bin/ij/gui/GUI.class
  36. BIN
      bin/ij/gui/GenericDialog$1.class
  37. BIN
      bin/ij/gui/GenericDialog$BrowseButtonListener.class
  38. BIN
      bin/ij/gui/GenericDialog$TextDropTarget.class
  39. BIN
      bin/ij/gui/GenericDialog.class
  40. BIN
      bin/ij/gui/HTMLDialog$1.class
  41. BIN
      bin/ij/gui/HTMLDialog$2.class
  42. BIN
      bin/ij/gui/HTMLDialog.class
  43. BIN
      bin/ij/gui/HistogramPlot.class
  44. BIN
      bin/ij/gui/HistogramWindow.class
  45. BIN
      bin/ij/gui/ImageCanvas$1.class
  46. BIN
      bin/ij/gui/ImageCanvas.class
  47. BIN
      bin/ij/gui/ImageLayout.class
  48. BIN
      bin/ij/gui/ImagePanel.class
  49. BIN
      bin/ij/gui/ImageRoi.class
  50. BIN
      bin/ij/gui/ImageWindow.class
  51. BIN
      bin/ij/gui/Line$PointIterator.class
  52. BIN
      bin/ij/gui/Line.class
  53. BIN
      bin/ij/gui/MessageDialog.class
  54. BIN
      bin/ij/gui/MultiLineLabel.class
  55. BIN
      bin/ij/gui/NewImage.class
  56. BIN
      bin/ij/gui/NonBlockingGenericDialog$1.class
  57. BIN
      bin/ij/gui/NonBlockingGenericDialog$2.class
  58. BIN
      bin/ij/gui/NonBlockingGenericDialog.class
  59. BIN
      bin/ij/gui/OvalRoi.class
  60. BIN
      bin/ij/gui/Overlay$1.class
  61. BIN
      bin/ij/gui/Overlay.class
  62. BIN
      bin/ij/gui/Plot.class
  63. BIN
      bin/ij/gui/PlotCanvas.class
  64. BIN
      bin/ij/gui/PlotContentsDialog.class
  65. BIN
      bin/ij/gui/PlotDialog$1.class
  66. BIN
      bin/ij/gui/PlotDialog.class
  67. BIN
      bin/ij/gui/PlotMaker.class
  68. BIN
      bin/ij/gui/PlotObject.class
  69. BIN
      bin/ij/gui/PlotProperties.class
  70. BIN
      bin/ij/gui/PlotVirtualStack.class
  71. BIN
      bin/ij/gui/PlotWindow$1.class
  72. BIN
      bin/ij/gui/PlotWindow.class
  73. BIN
      bin/ij/gui/PointRoi$1.class
  74. BIN
      bin/ij/gui/PointRoi.class
  75. BIN
      bin/ij/gui/PolygonRoi.class
  76. BIN
      bin/ij/gui/ProfilePlot.class
  77. BIN
      bin/ij/gui/ProgressBar.class
  78. BIN
      bin/ij/gui/Roi$RoiPointsIteratorMask.class
  79. BIN
      bin/ij/gui/Roi.class
  80. BIN
      bin/ij/gui/RoiBrush.class
  81. BIN
      bin/ij/gui/RoiDefaultsDialog.class
  82. BIN
      bin/ij/gui/RoiListener.class
  83. BIN
      bin/ij/gui/RoiProperties.class
  84. BIN
      bin/ij/gui/RotatedRectRoi.class
  85. BIN
      bin/ij/gui/SaveChangesDialog.class
  86. BIN
      bin/ij/gui/ScrollbarWithLabel$Icon.class
  87. BIN
      bin/ij/gui/ScrollbarWithLabel.class
  88. BIN
      bin/ij/gui/ShapeRoi.class
  89. BIN
      bin/ij/gui/StackWindow$1.class
  90. BIN
      bin/ij/gui/StackWindow$2.class
  91. BIN
      bin/ij/gui/StackWindow.class
  92. BIN
      bin/ij/gui/TextRoi.class
  93. BIN
      bin/ij/gui/Toolbar$1.class
  94. BIN
      bin/ij/gui/Toolbar.class
  95. BIN
      bin/ij/gui/TrimmedButton.class
  96. BIN
      bin/ij/gui/WaitForUserDialog.class
  97. BIN
      bin/ij/gui/Wand.class
  98. BIN
      bin/ij/gui/YesNoCancelDialog.class
  99. BIN
      bin/ij/io/BitBuffer.class
  100. BIN
      bin/ij/io/ByteVector.class

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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
<attributes>
<attribute name="module" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" path="src"/>
<classpathentry kind="lib" path="/Library/Java/JavaVirtualMachines/jdk1.8.0_311.jdk/Contents/Home/lib/tools.jar"/>
<classpathentry kind="output" path="bin"/>
</classpath>

+ 17
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.project View File

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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>IJ</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

+ 12
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.settings/org.eclipse.jdt.core.prefs View File

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eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
org.eclipse.jdt.core.compiler.compliance=1.8
org.eclipse.jdt.core.compiler.debug.lineNumber=generate
org.eclipse.jdt.core.compiler.debug.localVariable=generate
org.eclipse.jdt.core.compiler.debug.sourceFile=generate
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.release=enabled
org.eclipse.jdt.core.compiler.source=1.8

+ 466
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IJ_Props.txt View File

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# IJ_Props.txt - This is the ImageJ properties file. ImageJ uses
# the information in this file to install plug-ins in menus.
# ImageJ looks for this file in ij.jar. It can be edited by
# opening ij.jar with a ZIP utility.
# Note that commands must be unique.
# Version 1.53
# Commands installed in the right-click popup menu
# May be overridden in StartupMacros
popup01=Show Info...
popup02=Properties...
popup03=Rename...
popup04=Measure
popup05=Histogram
popup06=Duplicate Image...
popup07=Original Scale
popup08=-
popup09=Record...
popup10=Find Commands...
popup11=Capture Screen
# Plugins installed in the File/New submenu
new01="Image...[n]",ij.plugin.Commands("new")
new02="Hyperstack...",ij.plugin.HyperStackMaker
new03="Text Window[N]",ij.plugin.NewPlugin("text")
new04="Internal Clipboard",ij.plugin.Clipboard("show")
new05="System Clipboard[V]",ij.plugin.Clipboard("showsys")
# Plugins installed in the File/Import submenu
import01="Image Sequence...",ij.plugin.FolderOpener
import02="Raw...",ij.plugin.Raw
import03="LUT... ",ij.plugin.LutLoader
import04="Text Image... ",ij.plugin.TextReader
import05="Text File... ",ij.plugin.TextFileReader
import06="Results... ",ij.plugin.SimpleCommands("import")
import07="Table... ",ij.plugin.SimpleCommands("table")
import08="URL...",ij.plugin.URLOpener
import09="Stack From List...",ij.plugin.ListVirtualStack
import10="TIFF Virtual Stack...",ij.plugin.FileInfoVirtualStack
import11="AVI...",ij.plugin.AVI_Reader
import12="XY Coordinates... ",ij.plugin.XY_Reader
#import08="TWAIN...",ij.plugin.twain.Twain
#import09="Capture Video...",QT_Capture
#import10="QuickTime Movie...",Movie_Opener
#import11="Pict...",QuickTime_Opener
# Plugins installed in the File/Save As submenu
save01="Tiff...",ij.plugin.filter.Writer("tiff")
save02="Gif...",ij.plugin.filter.Writer("gif")
save03="Jpeg...",ij.plugin.filter.Writer("jpeg")
save04="Text Image...",ij.plugin.filter.Writer("text")
save05="ZIP...",ij.plugin.filter.Writer("zip")
save06="Raw Data...",ij.plugin.filter.Writer("raw")
save07="Image Sequence... ",ij.plugin.StackWriter
save08="AVI... ",ij.plugin.filter.AVI_Writer
save09="BMP...",ij.plugin.filter.Writer("bmp")
save10="PNG...",ij.plugin.filter.Writer("png")
save11="PGM...",ij.plugin.filter.Writer("pgm")
save12="FITS...",ij.plugin.filter.Writer("fits")
save13="LUT...",ij.plugin.filter.Writer("lut")
save14="Selection...",ij.plugin.filter.RoiWriter
save15="XY Coordinates...",ij.plugin.filter.XYWriter
save16="Results...",ij.plugin.MeasurementsWriter
save17="Text...",ij.plugin.TextWriter
#save18="QuickTime Movie... ",QT_Movie_Writer
# Plugins installed in the Edit/Selection submenu
selection01="Select All[a]",ij.plugin.Selection("all")
selection02="Select None[A]",ij.plugin.Selection("none")
selection03="Restore Selection[E]",ij.plugin.Selection("restore")
selection04="Fit Spline",ij.plugin.Selection("spline")
selection05="Fit Circle",ij.plugin.Selection("circle")
selection06="Fit Ellipse",ij.plugin.Selection("ellipse")
selection07="Fit Rectangle",ij.plugin.Selection("rect")
selection08="Interpolate",ij.plugin.Selection("interpolate")
selection09="Convex Hull",ij.plugin.Selection("hull")
selection10="Make Inverse",ij.plugin.Selection("inverse")
selection11="Create Selection",ij.plugin.Selection("from")
selection12="Create Mask",ij.plugin.Selection("mask")
selection13=-
selection14="Properties... [y]",ij.plugin.Selection("properties")
selection15="Scale... ",ij.plugin.RoiScaler
selection16="Rotate...",ij.plugin.Selection("rotate")
selection17="Enlarge...",ij.plugin.RoiEnlarger
selection18="Make Band...",ij.plugin.Selection("band")
selection19="Specify...",ij.plugin.SpecifyROI
selection20="Straighten...",ij.plugin.Straightener
selection21="To Bounding Box",ij.plugin.Selection("tobox")
selection22="Line to Area",ij.plugin.Selection("toarea")
selection23="Area to Line",ij.plugin.Selection("toline")
selection24="Image to Selection...",ij.plugin.OverlayCommands("image-roi")
selection25="Add to Manager[t]",ij.plugin.Selection("add")
# Plugins installed in the Edit/Options submenu
options01="Appearance...",ij.plugin.AppearanceOptions
options02="Arrow Tool...",ij.plugin.ArrowToolOptions
options03="Colors...",ij.plugin.Colors
options04="Compiler...",ij.plugin.Compiler("options")
options05="Conversions...",ij.plugin.Options("conv")
options06="DICOM...",ij.plugin.Options("dicom")
options07="Fonts...",ij.plugin.SimpleCommands("fonts")
options08="Input/Output...",ij.plugin.Options("io")
options09="Line Width...",ij.plugin.Options("line")
options10="Memory & Threads...",ij.plugin.Memory
options11="Misc...",ij.plugin.Options("misc")
options12="Plots...",ij.plugin.Profiler("set")
options13="Point Tool...",ij.plugin.PointToolOptions
options14="Proxy Settings...",ij.plugin.ProxySettings
options15="Roi Defaults...",ij.gui.RoiDefaultsDialog
options16="Rounded Rect Tool...",ij.plugin.RectToolOptions
options17="Startup...",ij.plugin.Startup
options18="Wand Tool...",ij.plugin.WandToolOptions
options19=-
options20="Fresh Start",ij.plugin.Options("fresh-start")
options21="Reset... ",ij.plugin.Options("reset")
# Plugins installed in the Image/Adjust submenu
adjust01="Brightness/Contrast...[C]",ij.plugin.frame.ContrastAdjuster
adjust02="Window/Level...",ij.plugin.frame.ContrastAdjuster("wl")
adjust03="Color Balance...",ij.plugin.frame.ContrastAdjuster("balance")
adjust04="Threshold...[T]",ij.plugin.frame.ThresholdAdjuster
adjust05="Color Threshold...",ij.plugin.frame.ColorThresholder
adjust06="Size...",ij.plugin.Resizer
adjust07="Canvas Size...",ij.plugin.CanvasResizer
adjust08="Line Width... ",ij.plugin.frame.LineWidthAdjuster
adjust09="Coordinates...",ij.plugin.Coordinates
# Plugins installed in the Image/Color submenu
color01="Split Channels",ij.plugin.ChannelSplitter
color02="Merge Channels...",ij.plugin.RGBStackMerge
color03="Arrange Channels...",ij.plugin.ChannelArranger
color04="Channels Tool...[Z]",ij.plugin.frame.Channels
color05=-
color06="Stack to RGB",ij.plugin.RGBStackConverter
color07="Make Composite",ij.plugin.CompositeConverter
color08="Show LUT",ij.plugin.filter.LutViewer
color09="Display LUTs",ij.plugin.SimpleCommands("display")
color10="Edit LUT...",ij.plugin.LUT_Editor
color11="Color Picker...[K]",ij.plugin.frame.ColorPicker
# Plugins installed in the Image/Stacks submenu
stacks01="Add Slice",ij.plugin.StackEditor("add")
stacks02="Delete Slice",ij.plugin.StackEditor("delete")
stacks03="Next Slice [>]",ij.plugin.Animator("next")
stacks04="Previous Slice [<]",ij.plugin.Animator("previous")
stacks05="Set Slice...",ij.plugin.Animator("set")
stacks06=-
stacks07="Images to Stack",ij.plugin.ImagesToStack
stacks08="Stack to Images",ij.plugin.StackEditor("toimages")
stacks09="Make Montage...",ij.plugin.MontageMaker
stacks10="Reslice [/]...",ij.plugin.Slicer
stacks11="Orthogonal Views[H]",ij.plugin.Orthogonal_Views
stacks12="Z Project...",ij.plugin.ZProjector
stacks13="3D Project...",ij.plugin.Projector
stacks14="Plot Z-axis Profile",ij.plugin.ZAxisProfiler
stacks15="Measure Stack...",ij.plugin.SimpleCommands("measure")
stacks16="Label...",ij.plugin.filter.StackLabeler
stacks17="Statistics",ij.plugin.Stack_Statistics
# Plugins installed in the Image/Stacks/Animation submenu
animation_01="Start Animation [\\]",ij.plugin.Animator("start")
animation_02="Stop Animation",ij.plugin.Animator("stop")
animation_03="Animation Options...",ij.plugin.Animator("options")
# Plugins installed in the Image/Stacks/Tools submenu
tools_01="Combine...",ij.plugin.StackCombiner
tools_02="Concatenate...",ij.plugin.Concatenator
tools_03="Grouped Z Project...",ij.plugin.GroupedZProjector
tools_04="Insert...",ij.plugin.StackInserter
tools_05="Magic Montage Tools",ij.plugin.SimpleCommands("magic")
tools_06="Make Substack...",ij.plugin.SubstackMaker
tools_07="Montage to Stack...",ij.plugin.StackMaker
tools_08="Plot XY Profile",ij.plugin.StackPlotter
tools_09="Reduce...",ij.plugin.StackReducer
tools_10="Remove Slice Labels",ij.plugin.SimpleCommands("remove")
tools_11="Reverse",ij.plugin.StackReverser
tools_12="Set Label...",ij.plugin.SimpleCommands("set")
# Plugins installed in the Image/Hyperstacks submenu
hyperstacks01="New Hyperstack...",ij.plugin.HyperStackMaker
hyperstacks02="Stack to Hyperstack...",ij.plugin.HyperStackConverter("stacktohs")
hyperstacks03="Hyperstack to Stack",ij.plugin.HyperStackConverter("hstostack")
hyperstacks04="Reduce Dimensionality...",ij.plugin.HyperStackReducer
# Plugins installed in the Image/Transform submenu
transform01="Flip Horizontally",ij.plugin.filter.Transformer("fliph")
transform02="Flip Vertically",ij.plugin.filter.Transformer("flipv")
transform03="Flip Z",ij.plugin.StackReverser
transform04="Rotate 90 Degrees Right",ij.plugin.filter.Transformer("right")
transform05="Rotate 90 Degrees Left",ij.plugin.filter.Transformer("left")
transform06="Rotate... ",ij.plugin.filter.Rotator
transform07="Translate...",ij.plugin.filter.Translator
transform08="Bin...",ij.plugin.Binner
transform09=-
transform10="Image to Results",ij.plugin.SimpleCommands("itor")
transform11="Results to Image",ij.plugin.SimpleCommands("rtoi")
# Plugins installed in the Image/Zoom submenu
zoom01="In [+]",ij.plugin.Zoom("in")
zoom02="Out [-]",ij.plugin.Zoom("out")
zoom03="Original Scale[4]",ij.plugin.Zoom("orig")
zoom04="View 100%[5]",ij.plugin.Zoom("100%")
zoom05="To Selection",ij.plugin.Zoom("to")
zoom06="Scale to Fit",ij.plugin.Zoom("scale")
zoom07="Set... ",ij.plugin.Zoom("set")
zoom08="Maximize",ij.plugin.Zoom("max")
# Plugins installed in the Image/Overlay submenu
overlay01="Add Selection...[b]",ij.plugin.OverlayCommands("add")
overlay02="Add Image...",ij.plugin.OverlayCommands("image")
overlay03="Hide Overlay",ij.plugin.OverlayCommands("hide")
overlay04="Show Overlay",ij.plugin.OverlayCommands("show")
overlay05="From ROI Manager",ij.plugin.OverlayCommands("from")
overlay06="To ROI Manager",ij.plugin.OverlayCommands("to")
overlay07="Remove Overlay",ij.plugin.OverlayCommands("remove")
overlay08="List Elements",ij.plugin.OverlayCommands("list")
overlay09="Flatten[F]",ij.plugin.OverlayCommands("flatten")
overlay10="Labels...",ij.plugin.OverlayLabels
overlay11="Measure Overlay",ij.plugin.OverlayCommands("measure")
overlay12="Overlay Options...[Y]",ij.plugin.OverlayCommands("options")
# Plugins installed in the Image/Lookup Tables submenu
lookup01="Invert LUT",ij.plugin.LutLoader("invert")
lookup02="Apply LUT",ij.plugin.filter.LutApplier
lookup03=-
lookup04="Fire",ij.plugin.LutLoader("fire")
lookup05="Grays",ij.plugin.LutLoader("grays")
lookup06="Ice",ij.plugin.LutLoader("ice")
lookup07="Spectrum",ij.plugin.LutLoader("spectrum")
lookup08="3-3-2 RGB",ij.plugin.LutLoader("3-3-2 RGB")
lookup09="Red",ij.plugin.LutLoader("red")
lookup10="Green",ij.plugin.LutLoader("green")
lookup11="Blue",ij.plugin.LutLoader("blue")
lookup12="Cyan",ij.plugin.LutLoader("cyan")
lookup13="Magenta",ij.plugin.LutLoader("magenta")
lookup14="Yellow",ij.plugin.LutLoader("yellow")
lookup15="Red/Green",ij.plugin.LutLoader("redgreen")
# Plug-ins installed in the Process/Noise submenu
noise01="Add Noise",ij.plugin.filter.Filters("add")
noise02="Add Specified Noise...",ij.plugin.filter.Filters("noise")
noise03="Salt and Pepper",ij.plugin.filter.SaltAndPepper
noise04=-
noise05="Despeckle",ij.plugin.filter.RankFilters("despeckle")
noise06="Remove Outliers...",ij.plugin.filter.RankFilters("outliers")
noise07="Remove NaNs...",ij.plugin.filter.RankFilters("nan")
# Plugins installed in the Process/Shadows submenu
shadows01="North",ij.plugin.filter.Shadows("north")
shadows02="Northeast",ij.plugin.filter.Shadows("northeast")
shadows03="East",ij.plugin.filter.Shadows("east")
shadows04="Southeast",ij.plugin.filter.Shadows("southeast")
shadows05="South",ij.plugin.filter.Shadows("south")
shadows06="Southwest",ij.plugin.filter.Shadows("southwest")
shadows07="West",ij.plugin.filter.Shadows("west")
shadows08="Northwest",ij.plugin.filter.Shadows("northwest")
shadows09=-
shadows10="Shadows Demo",ij.plugin.filter.Shadows("demo")
# Plugins installed in the Process/Binary submenu
binary01="Make Binary",ij.plugin.Thresholder
binary02="Convert to Mask",ij.plugin.Thresholder("mask")
binary03=-
binary04="Erode",ij.plugin.filter.Binary("erode")
binary05="Dilate",ij.plugin.filter.Binary("dilate")
binary06="Open",ij.plugin.filter.Binary("open")
# Can't use "Close" because it conflicts with File/Close
binary07="Close-",ij.plugin.filter.Binary("close")
binary08=-
binary09="Outline",ij.plugin.filter.Binary("outline")
binary10="Fill Holes",ij.plugin.filter.Binary("fill")
binary11="Skeletonize",ij.plugin.filter.Binary("skel")
binary12=-
binary13="Distance Map",ij.plugin.filter.EDM("edm")
binary14="Ultimate Points",ij.plugin.filter.EDM("points")
binary15="Watershed",ij.plugin.filter.EDM("watershed")
binary16="Voronoi",ij.plugin.filter.EDM("voronoi")
binary17=-
binary18="Options...",ij.plugin.filter.Binary("options")
# Plugins installed in the Process/Math submenu
math01="Add...",ij.plugin.filter.ImageMath("add")
math02="Subtract...",ij.plugin.filter.ImageMath("sub")
math03="Multiply...",ij.plugin.filter.ImageMath("mul")
math04="Divide...",ij.plugin.filter.ImageMath("div")
math05="AND...",ij.plugin.filter.ImageMath("and")
math06="OR...",ij.plugin.filter.ImageMath("or")
math07="XOR...",ij.plugin.filter.ImageMath("xor")
math08="Min...",ij.plugin.filter.ImageMath("min")
math09="Max...",ij.plugin.filter.ImageMath("max")
math10="Gamma...",ij.plugin.filter.ImageMath("gamma")
math11="Set...",ij.plugin.filter.ImageMath("set")
math12="Log",ij.plugin.filter.ImageMath("log")
math13="Exp",ij.plugin.filter.ImageMath("exp")
math14="Square",ij.plugin.filter.ImageMath("sqr")
math15="Square Root",ij.plugin.filter.ImageMath("sqrt")
math16="Reciprocal",ij.plugin.filter.ImageMath("reciprocal")
math17="NaN Background",ij.plugin.filter.ImageMath("nan")
math18="Abs",ij.plugin.filter.ImageMath("abs")
math19="Macro...",ij.plugin.filter.ImageMath("macro")
# Plugins installed in the Process/FFT submenu
fft01="FFT",ij.plugin.FFT("fft")
fft02="Inverse FFT",ij.plugin.FFT("inverse")
fft03="Redisplay Power Spectrum",ij.plugin.FFT("redisplay")
fft04="FFT Options...",ij.plugin.FFT("options")
fft05=-
fft06="Bandpass Filter...",ij.plugin.filter.FFTFilter
fft07="Custom Filter...",ij.plugin.filter.FFTCustomFilter
fft08="FD Math...",ij.plugin.FFTMath
fft09="Swap Quadrants",ij.plugin.FFT("swap")
fft10="Make Circular Selection...",ij.plugin.CircularRoiMaker
# Plugins installed in the Process/Filters submenu
filters01="Convolve...",ij.plugin.filter.Convolver
filters02="Gaussian Blur...",ij.plugin.filter.GaussianBlur
filters03="Median...",ij.plugin.filter.RankFilters("median")
filters04="Mean...",ij.plugin.filter.RankFilters("mean")
filters05="Minimum...",ij.plugin.filter.RankFilters("min")
filters06="Maximum...",ij.plugin.filter.RankFilters("max")
filters07="Unsharp Mask...",ij.plugin.filter.UnsharpMask
filters08="Variance...",ij.plugin.filter.RankFilters("variance")
filters09="Top Hat...",ij.plugin.filter.RankFilters("tophat")
filters10=-
filters11="Gaussian Blur 3D...",ij.plugin.GaussianBlur3D
filters12="Median 3D...",ij.plugin.Filters3D("median")
filters13="Mean 3D...",ij.plugin.Filters3D("mean")
filters14="Minimum 3D...",ij.plugin.Filters3D("min")
filters15="Maximum 3D...",ij.plugin.Filters3D("max")
filters16="Variance 3D...",ij.plugin.Filters3D("var")
filters17=-
filters18="Show Circular Masks...",ij.plugin.filter.RankFilters("masks")
# Plugins installed in the File/Batch submenu
batch01="Measure...",ij.plugin.BatchMeasure
batch02="Convert...",ij.plugin.BatchConverter
batch03="Macro... ",ij.plugin.BatchProcessor
batch04="Virtual Stack...",ij.plugin.BatchProcessor("stack")
# Plugins installed in the Analyze/Gels submenu
gels01="Select First Lane[1]",ij.plugin.GelAnalyzer("first")
gels02="Select Next Lane[2]",ij.plugin.GelAnalyzer("next")
gels03="Plot Lanes[3]",ij.plugin.GelAnalyzer("plot")
gels04="Re-plot Lanes",ij.plugin.GelAnalyzer("replot")
gels05="Reset",ij.plugin.GelAnalyzer("reset")
gels06="Label Peaks",ij.plugin.GelAnalyzer("label")
gels07="Gel Analyzer Options...",ij.plugin.GelAnalyzer("options")
# Plugins installed in the Analyze/Tools submenu
tools01="Save XY Coordinates...",ij.plugin.XYCoordinates
tools02="Fractal Box Count...",ij.plugin.filter.FractalBoxCounter
tools03="Analyze Line Graph",ij.plugin.filter.LineGraphAnalyzer
tools04="Curve Fitting...",ij.plugin.frame.Fitter
tools05="ROI Manager...",ij.plugin.frame.RoiManager
tools06="Scale Bar...",ij.plugin.ScaleBar
tools07="Calibration Bar...",ij.plugin.CalibrationBar
tools08="Synchronize Windows",ij.plugin.frame.SyncWindows
tools09="Grid...",ij.plugin.Grid
# Plugins installed in the Plugins menu
plug-in01=>"Macros"
plug-in02=>"Shortcuts"
plug-in03=>"Utilities"
plug-in04=>"New_"
plug-in05="Compile and Run...",ij.plugin.Compiler
plug-in06="Install... [M]",ij.plugin.PluginInstaller
#plug-in07=-
#plug-in08=>"User_Plugins"
# Install user plugins located in ij.jar to Plugins>User Plugins submenu
#user_plugins01="Red And Blue",RedAndBlue_
#user_plugins02="Inverter",Inverter_
# Plugins installed in the Plugins/Macros submenu
# 'MACROS_MENU_COMMANDS' in MacroInstaller must be updated when items are added
macros01="Install...",ij.plugin.MacroInstaller
macros02="Run...",ij.plugin.Macro_Runner
macros03="Edit...",ij.plugin.Compiler("edit")
macros04="Startup Macros...",ij.plugin.Commands("startup")
macros05="Interactive Interpreter...[j]",ij.plugin.SimpleCommands("interactive")
macros06="Record...",ij.plugin.frame.Recorder
macros07=-
# Plugins installed in the Plugins/Shortcuts submenu
shortcuts01="Add Shortcut... ",ij.plugin.Hotkeys("install")
shortcuts02="Add Shortcut by Name... ",ij.plugin.Hotkeys("install2")
shortcuts03="Remove Shortcut...",ij.plugin.Hotkeys("remove")
shortcuts04="List Shortcuts",ij.plugin.CommandLister("shortcuts")
shortcuts05="List Commands",ij.plugin.Hotkeys("list")
shortcuts06=-
# Plugins installed in the Plugins/Utilities submenu
utilities01="Control Panel...[U]",ij.plugin.ControlPanel
utilities02="Find Commands...[l]",ij.plugin.CommandFinder
utilities03="Commands...[L]",ij.plugin.frame.Commands
utilities04="Search...",ij.plugin.SimpleCommands("search")
utilities05="Monitor Events...",ij.plugin.EventListener
utilities06="Monitor Memory...",ij.plugin.frame.MemoryMonitor
utilities07=-
utilities08="Capture Screen[G]",ij.plugin.ScreenGrabber
utilities09="Capture Delayed...",ij.plugin.ScreenGrabber("delay")
utilities10="Capture Image",ij.plugin.ScreenGrabber("image")
utilities11=-
utilities12="ImageJ Properties",ij.plugin.JavaProperties
utilities13="Threads",ij.plugin.ThreadLister
utilities14="Benchmark",ij.plugin.Benchmark
utilities15="Reset...",ij.plugin.SimpleCommands("reset")
# Plugins installed in the Plugins/New submenu
new_01="Macro",ij.plugin.NewPlugin("macro")
new_02="Macro Tool",ij.plugin.NewPlugin("macro-tool")
new_03="JavaScript",ij.plugin.NewPlugin("javascript")
new_04=-
new_05="Plugin",ij.plugin.NewPlugin("plugin")
new_06="Plugin Filter",ij.plugin.NewPlugin("filter")
new_07="Plugin Frame",ij.plugin.NewPlugin("frame")
new_08="Plugin Tool",ij.plugin.NewPlugin("plugin-tool")
new_09=-
new_10="Text Window...",ij.plugin.NewPlugin("text+dialog")
# Plugins installed in the Help/About submenu
about01="About This Submenu...",ij.plugin.SimpleCommands("about")
about02=-
# URL of directory containing the sample images
# location2 is uses with Java 6, which does not support https
images.location=https://imagej.net/images/
images.location2=http://imagej.net/images/
# Images installed in the Open Samples submenu
# RawReader expects a string with "name width height nImages bitsPerPixel offset [white]"
open01="AuPbSn 40",ij.plugin.URLOpener("AuPbSn40.jpg")
open02="Bat Cochlea Volume",ij.plugin.URLOpener("bat-cochlea-volume.zip")
open03="Bat Cochlea Renderings",ij.plugin.URLOpener("bat-cochlea-renderings.zip")
open04="Blobs[B]",ij.plugin.URLOpener("blobs.gif")
open05="Boats",ij.plugin.URLOpener("boats.gif")
open06="Cardio (RGB DICOM)",ij.plugin.URLOpener("cardio.dcm.zip")
open07="Cell Colony",ij.plugin.URLOpener("Cell_Colony.jpg")
open08="Clown",ij.plugin.URLOpener("clown.jpg")
open09="Confocal Series",ij.plugin.URLOpener("confocal-series.zip")
open10="CT (16-bit DICOM)",ij.plugin.URLOpener("ct.dcm.zip")
open11="Dot Blot",ij.plugin.URLOpener("Dot_Blot.jpg")
open12="Embryos",ij.plugin.URLOpener("embryos.jpg")
open13="Fluorescent Cells",ij.plugin.URLOpener("FluorescentCells.zip")
open14="Fly Brain",ij.plugin.URLOpener("flybrain.zip")
open15="Gel",ij.plugin.URLOpener("gel.gif")
open16="HeLa Cells (48-bit RGB)",ij.plugin.URLOpener("hela-cells.zip")
open17="Image with Overlay",ij.plugin.URLOpener("ImageWithOverlay.zip")
open18="Leaf",ij.plugin.URLOpener("leaf.jpg")
open19="Line Graph",ij.plugin.URLOpener("LineGraph.jpg")
open20="Mitosis (5D stack)",ij.plugin.URLOpener("Spindly-GFP.zip")
open21="MRI Stack",ij.plugin.URLOpener("mri-stack.zip")
open22="M51 Galaxy (16-bits)",ij.plugin.URLOpener("m51.zip")
open23="Neuron (5 channels)",ij.plugin.URLOpener("Rat_Hippocampal_Neuron.zip")
open24="Nile Bend",ij.plugin.URLOpener("NileBend.jpg")
open25="Organ of Corti (4D stack)",ij.plugin.URLOpener("organ-of-corti.zip")
open26="Particles",ij.plugin.URLOpener("particles.gif")
open27="T1 Head (16-bits)",ij.plugin.URLOpener("t1-head.zip")
open28="T1 Head Renderings",ij.plugin.URLOpener("t1-rendering.zip")
open29="TEM Filter",ij.plugin.URLOpener("TEM_filter_sample.jpg")
open30="Tree Rings",ij.plugin.URLOpener("Tree_Rings.jpg")

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bin/ij/CommandListener.class View File


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bin/ij/CompositeImage.class View File


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bin/ij/IJ$ExceptionHandler.class View File


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bin/ij/IJ.class View File


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bin/ij/ImageJ$ExceptionHandler.class View File


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bin/ij/ImagePlus.class View File


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bin/ij/gui/GenericDialog$1.class View File


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bin/ij/gui/GenericDialog$BrowseButtonListener.class View File


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bin/ij/gui/GenericDialog$TextDropTarget.class View File


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bin/ij/gui/HTMLDialog$1.class View File


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bin/ij/gui/HTMLDialog.class View File


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bin/ij/gui/HistogramWindow.class View File


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bin/ij/gui/ImageCanvas$1.class View File


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bin/ij/gui/ImageLayout.class View File


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bin/ij/gui/ImageRoi.class View File


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bin/ij/gui/Line$PointIterator.class View File


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bin/ij/gui/Line.class View File


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bin/ij/gui/MessageDialog.class View File


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bin/ij/gui/MultiLineLabel.class View File


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bin/ij/gui/NonBlockingGenericDialog$1.class View File


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bin/ij/gui/NonBlockingGenericDialog$2.class View File


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bin/ij/gui/NonBlockingGenericDialog.class View File


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bin/ij/gui/OvalRoi.class View File


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bin/ij/gui/Overlay$1.class View File


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bin/ij/gui/Overlay.class View File


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bin/ij/gui/Plot.class View File


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bin/ij/gui/PlotCanvas.class View File


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bin/ij/gui/PlotContentsDialog.class View File


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bin/ij/gui/PlotDialog$1.class View File


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bin/ij/gui/PlotDialog.class View File


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bin/ij/gui/PlotMaker.class View File


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bin/ij/gui/PlotObject.class View File


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bin/ij/gui/PlotProperties.class View File


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bin/ij/gui/PlotVirtualStack.class View File


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bin/ij/gui/PlotWindow$1.class View File


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bin/ij/gui/PlotWindow.class View File


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bin/ij/gui/PointRoi$1.class View File


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bin/ij/gui/PointRoi.class View File


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bin/ij/gui/PolygonRoi.class View File


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bin/ij/gui/ProfilePlot.class View File


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bin/ij/gui/ProgressBar.class View File


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bin/ij/gui/Roi$RoiPointsIteratorMask.class View File


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bin/ij/gui/Roi.class View File


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bin/ij/gui/RoiBrush.class View File


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bin/ij/gui/RoiDefaultsDialog.class View File


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bin/ij/gui/RoiProperties.class View File


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bin/ij/gui/RotatedRectRoi.class View File


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bin/ij/gui/SaveChangesDialog.class View File


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bin/ij/gui/ScrollbarWithLabel$Icon.class View File


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bin/ij/gui/StackWindow$1.class View File


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bin/ij/gui/StackWindow$2.class View File


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bin/ij/gui/StackWindow.class View File


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bin/ij/gui/TextRoi.class View File


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bin/ij/gui/Toolbar$1.class View File


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bin/ij/gui/Toolbar.class View File


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bin/ij/io/ByteVector.class View File


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