ImageJ base code to get access to all the classes and their methods to test new Plugins. https://imagejdocu.tudor.lu/howto/plugins/the_imagej_eclipse_howto
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281 lines
9.8 KiB
281 lines
9.8 KiB
// hit = 0x01<<i (left, middle, right, top, center, bottom)
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// r remarkable points, 6 for image + 6 per ROIs, same order as hit
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// dragged roi snaps to guides.
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macro "Move Overlay Tool - C037O33aaL03f3L303f" {
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getCursorLoc( x, y, z, flags );
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selectNone( );
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r = newArray( 0, getWidth / 2, getWidth, 0, getHeight / 2, getHeight );
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n = Overlay.size;
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if( n < 1 ) exit( "Overlay required" );
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id = Overlay.indexAt( x, y );
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for( i = 0; i < n; i ++ ) {
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if( i != id ) {
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Overlay.getBounds( i, bx, by, bw, bh );
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er = newArray( bx, bx + bw / 2, bx + bw, by, by + bh / 2, by + bh );
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r = Array.concat( r, er );
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}
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}
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while( flags & 16 > 0 ) {
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getCursorLoc( x, y, z, flags );
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Overlay.getBounds( id, bx, by, bw, bh );
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if( id < 0 ) break;
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Overlay.moveSelection( id, x - bw / 2, y - bh / 2 );
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Overlay.getBounds( id, bx, by, bw, bh );
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d = newArray( bx, bx + bw / 2, bx + bw, by, by + bw / 2, by + bh );
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while( Overlay.size > n ) Overlay.removeSelection( Overlay.size - 1 );
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hit = 0x00;
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for( i = 0; i < r.length; i = i + 6 ) { // each element
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for( p = 0; p < 6; p ++ ) // each remarkable point
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if( abs( d [ p ]- r [ i + p ] )< 5 ) {
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hit = hit |( 0x01 << p ); // allows for multiple hits
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}
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if( hit > 0 ) {
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ihit = i;
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break;
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}
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}
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for( i = 0; i < 6; i ++ ) {
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if( hit &( 1 << i )> 0 ) {
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if( i < 3 ) {
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Overlay.getBounds( id, bx, by, bw, bh );
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Overlay.drawLine( r [ ihit + i ], 0, r [ ihit + i ], getHeight );
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if( i == 0 ) Overlay.moveSelection( id, r [ ihit + i ], by );
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if( i == 1 ) Overlay.moveSelection( id, r [ ihit + i ]- bw / 2, by );
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if( i == 2 ) Overlay.moveSelection( id, r [ ihit + i ]- bw, by );
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}
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if( i >= 3 ) {
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Overlay.getBounds( id, bx, by, bw, bh );
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Overlay.drawLine( 0, r [ ihit + i ], getWidth, r [ ihit + i ] );
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if( i == 3 ) Overlay.moveSelection( id, bx, r [ ihit + i ] );
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if( i == 4 ) Overlay.moveSelection( id, bx, r [ ihit + i ]- bh / 2 );
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if( i == 5 ) Overlay.moveSelection( id, bx, r [ ihit + i ]- bh );
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}
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}
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}
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Overlay.show;
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wait( 20 );
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}
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while( Overlay.size > n ) Overlay.removeSelection( Overlay.size - 1 );
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}
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// a tool to select one or more overlay elements
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// selection is stored in preferences
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// click outside a roi to deselect all
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// a menu tool to align selected overlay elements
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macro "Select Overlay Tool - Ce00R22fbC0e0o0044C037L77ffL777aL77a7" {
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getCursorLoc( x, y, z, flags );
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Overlay.removeRois( 'ToolSelectedOverlayElement' );
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Overlay.show;
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n = Overlay.size;
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if( n < 1 ) exit( "Overlay required" );
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id = Overlay.indexAt( x, y );
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if( id < 0 ) {
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selectNone( );
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call( 'ij.Prefs.set', 'overlaytoolset.selected', '' );
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exit( );
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}
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if( flags & 1 > 0 ) {
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Overlay.activateSelection( id );
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if( Roi.getName != 'ToolSelectedOverlayElement' )
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selectElement( id, true );
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} else {
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Overlay.activateSelection( id );
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if( Roi.getName != 'ToolSelectedOverlayElement' )
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selectElement( id, false );
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}
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run( "Select None" );
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highlightSelectedROIs( );
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}
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function highlightSelectedROIs( ) {
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Overlay.removeRois( 'ToolSelectedOverlayElement' );
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selected = getSelectedElements( );
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s = split( selected, ',' );
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//print( selected );
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for( i = 0; i < s.length; i ++ ) {
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id = s [ i ];
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Overlay.getBounds( id, bx, by, bw, bh );
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makeRectangle( bx, by, bw, bh );
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Roi.setName( 'ToolSelectedOverlayElement' );
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Overlay.addSelection( '#90ff0000', 3 );
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}
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run( "Select None" );
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Overlay.show;
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}
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function selectNone( ) {
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Overlay.removeRois( 'ToolSelectedOverlayElement' );
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Overlay.show;
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//call( 'ij.Prefs.set', 'overlaytoolset.selected', '' );
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}
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function selectElement( id, add ) {
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if( add == true ) {
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selected = getSelectedElements( );
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s = split( selected, ',' );
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isSelected = false;
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for( i = 0; i < s.length; i ++ ) {
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if( 1 * s [ i ]== id ) isSelected = true;
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}
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if( ! isSelected ) {
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call( 'ij.Prefs.set', 'overlaytoolset.selected', selected + ',' + id );
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selected = getSelectedElements( );
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} else {
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unselectElement( id );
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}
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} else {
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call( 'ij.Prefs.set', 'overlaytoolset.selected', id );
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}
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highlightSelectedROIs( );
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}
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function unselectElement( id ) {
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selected = getSelectedElements( );
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s = split( selected, ',' );
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selected = '';
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for( i = 0; i < s.length; i ++ ) {
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if( s [ i ]!= id ) selected = selected + s [ i ]+ ',';
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}
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call( 'ij.Prefs.set', 'overlaytoolset.selected', selected );
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selected = getSelectedElements( );
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highlightSelectedROIs( );
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run( "Select None" );
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}
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function getSelectedElements( ) {
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selected = call( 'ij.Prefs.get', 'overlaytoolset.selected', '' );
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while( selected.endsWith( "," ) ) selected = substring( selected, 0, lengthOf( selected )- 1 );
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while( selected.startsWith( "," ) ) selected = substring( selected, 1, lengthOf( selected ) );
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return selected;
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}
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var dCmds = newMenu( "Align Overlay Menu Tool",
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newArray( "Top", "Middle", "Bottom", "-", "Left", "Center", "Right" ) );
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// a menu tool to align selected ROIs
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macro "Align Overlay Menu Tool - C037L00f0R2244R8248" {
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cmd = getArgument( );
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if( cmd == "Top" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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tops = newArray( s.length );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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tops [ i ]= y;
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}
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//Array.print( tops );
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Array.getStatistics( tops, min, max, mean, stdDev );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], x, min );
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}
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Overlay.show( );
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} else if( cmd == "Bottom" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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tops = newArray( s.length );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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tops [ i ]= y + h;
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}
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Array.getStatistics( tops, min, max, mean, stdDev );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], x, max - h );
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}
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selectNone( );
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} else if( cmd == "Left" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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tops = newArray( s.length );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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tops [ i ]= x;
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}
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Array.getStatistics( tops, min, max, mean, stdDev );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], min, y );
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}
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selectNone( );
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} else if( cmd == "Right" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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tops = newArray( s.length );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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tops [ i ]= x + w;
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}
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Array.getStatistics( tops, min, max, mean, stdDev );
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for( i = 0; i < tops.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], max - w, y );
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}
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selectNone( );
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} else if( cmd == "Middle" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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Overlay.getBounds( s [ 0 ], x, y, w, h );
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middle = y + h / 2;
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for( i = 0; i < s.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], x, middle - h / 2 );
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}
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selectNone( );
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} else if( cmd == "Center" ) {
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s = getSelectedElements( );
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s = split( s, ',' );
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if( s.length < 1 ) exit( );
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Overlay.getBounds( s [ 0 ], x, y, w, h );
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center = x + w / 2;
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for( i = 0; i < s.length; i ++ ) {
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Overlay.getBounds( s [ i ], x, y, w, h );
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Overlay.moveSelection( s [ i ], center - w / 2, y );
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}
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selectNone( );
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}
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highlightSelectedROIs( );
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}
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// Click to delete Overlay element
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// A confirm dialog is shown
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// you can choose not to show it.
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macro "Delete Overlay Tool - C037R00ddB58Cd00L0088L0880" {
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getCursorLoc( x, y, z, flags );
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selectNone( );
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call( 'ij.Prefs.set', 'overlaytoolset.selected', '' );
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id = Overlay.indexAt( x, y );
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if( id != - 1 ) {
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showWarning = call( "ij.Prefs.get", "overlaytoolset.deletewarning", true );
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mustDelete = true;
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if( showWarning == true ) {
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Dialog.create( "Delete ROI tool options" );
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Dialog.addCheckbox( "Delete this ROI", true );
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Dialog.addCheckbox( "Show this dialog", showWarning );
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Dialog.show( );
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mustDelete = Dialog.getCheckbox( );
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showWarning = Dialog.getCheckbox( );
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call( "ij.Prefs.set", "overlaytoolset.deletewarning", showWarning );
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}
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if( mustDelete ) Overlay.removeSelection( id );
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}
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}
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macro "Overlay Toolset Help Action Tool - C037T3f18?" {
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html = "<html>" +
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"Toolset Description<br>" +
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"<br><p>* Move overlay tool" +
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"<br>Click and drag an overlay element;" +
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"<br>It snaps to alignment guides to other elements.</p>" +
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"<br><p>* Overlay select tool" +
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"<br>Click an overlay element to select it." +
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"<br>Shift-click to add elements to the selection." +
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"<br>Shift-click a selected element to deselect it.</p>" +
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"<br><p>* Overlay align tool menu" +
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"<br>Use this menu to align selected elements</p>" +
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"<br><p>* Overlay delete tool" +
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"<br>Click to remove an overlay element</p>" +
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"<br><p>* Overlay toolset help action tool" +
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"<br>This dialog. You can leave it open to try toolset functions.</p>" +
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"</html>";
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Dialog.createNonBlocking( "Overlay Toolset Help" );
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Dialog.addMessage( html );
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Dialog.show( );
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}
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