# The ITMorelia Protocol Class

The present Redme file shows how to work with and compile the `Protocol-Class` in LaTeX. This class is mainly base in the `Thesis-Class`![](). If you want know what sections should be included and its content visit the **Wiki** of this repository.

# Repository structure
Below you can see the repository's contents. The repository is made of 27 files and 2 folders. The folder `Chapters` includes each `.tex` file that will be included on your portocol; later you will learn how to included. On the other hand, the folder `FrontBackMatter` folder includes `.tex` files related with common chapters/section required on protocols guides like: *Titlepage, Abstract, Colophon, Dedication, Glossary, and others*; you can include as much as you need.

In the `root` are files related with the organization and the structure of the **Protocol** (the `thesisStructure.tex` and `precontent.tex` files). Also, in `root` is included the main file that gives the special format to the document (`itmthesis.cls`), and finally the `Reference.bib` file to include a bibliography on your work.      

```bash
.
├── Chapters
│   ├── A01.tex
│   ├── Chapter01.tex
│   ├── Chapter02.tex
│   └── Chapter0A.tex
├── configuration.tex
├── FrontBackMatter
│   ├── Abstract.tex
│   ├── Bibliography.tex
│   ├── Colophon.tex
│   ├── Contents.tex
│   ├── Declaration.tex
│   ├── Dedication.tex
│   ├── Foreword.tex
│   ├── glossary-entries.tex
│   ├── Glossary.tex
│   ├── Resumen.tex
│   ├── Titleback.tex
│   ├── TitlepageIng.tex
│   └── TitlepageMC.tex
├── itm.jpg
├── itmthesis.cls
├── precontent.tex
├── README.md
├── Reference.bib
├── sepLogo.jpg
├── tecnmBW.png
├── thesisStructure.pdf
└── thesisStructure.tex
```

# The `thesisStructure` file
The main file in the project is the `thesisStructure.tex` file. The file is mainly divided on four parts: 1)Configuration, 2)Front Matter, 3) Main contents, and 4) References and 5)Back Matter. 

The file contents is show below and detailed explained on next sections.

``` tex
% Engineering, master and phd degree 
%PROPOSAL(PROTOCOL) format, April 2021, for the 
%**Instituto Tecnológico de Morelia**
%-=-=-=-=-=-=-=-=-=-=-=-=-
% 1)Configuration:
\documentclass[listings,drafting,spanish]{itmthesis} %itm thesis class
\input{configuration}% configuration and packages
\input{FrontBackMatter/glossary-entries}
\begin{document}
% -=-=-=-=-=-=-=-=-=-=-=-=-
% 2)Front Matter:
\pagenumbering{roman} % Roman page numbering 
\input{precontent} %Includes titlepage, dedication, Foreword, abstract, publication, acknowledgement
\include{FrontBackMatter/Contents} % Contents, list of figures/tables/listings and acronyms
\pagenumbering{arabic} % Arabic page numbering
%-=-=-=-=-=-=-=-=-=-=-=-=-
% 3) Thesis Main Contents
\include{Chapters/Chapter01} %Introduction
\cleardoublepage
\include{Chapters/Chapter02} %Results
%-=-=-=-=-=-=-=-=-=-=-=-=-
% Apendix
\appendix
\include{Chapters/Chapter0A} % Appendix A
%-=-=-=-=-=-=-=-=-=-=-=-=-
% 4) References
\cleardoublepage
\include{FrontBackMatter/Bibliography}
%-=-=-=-=-=-=-=-=-=-=-=-=-
% 5) Back Matter
\cleardoublepage
\include{FrontBackMatter/Colophon}
%-=-=-=-=-=-=-=-=-=-=-=-=-
\end{document}
%%% Local Variables:
%%% mode: latex
%%% TeX-master: t
%%% End:
```

## 1) Configuration section ##

### Class' options ###

The code next only refers to the configuration of the `itmthesis` class:

``` tex
% 1)Configuration:
\documentclass[listings,drafting,spanish]{itmthesis} %itm thesis class
\input{configuration}% configuration and packages
\input{FrontBackMatter/glossary-entries}
```

From here the document class, for the Protocol, is defined with `\documentclass[<options>]{itmthesis}`, and this file determine the way the PDF file is generated by the options. The options defined are:

- `drafting`: The options prints the date of compilation at the end of each page. Suitable opton to know that the latest version is on review or writing process.
- `listing`: The option loads the `listings` package and configures the compilation to generates a gray scale listings outputs.
- `spanish`: The option enables the babel package to print-out the sectional units on spanish language; otherwise, english will be used.

### `configuration.tex` file ###

Then, `\input` command is used to include files with `LaTeX` commands. Specifically, the `configuration` file includes all the required packages and its configuration, variable(title, author, university, and so on), and command definitions. The complete code is shown next and sectioned on: 1)Listing configuration, 2)Command and Variable definitions, 3)Short descriptions on Math, 4)Packages, and 5)Text space configuration(indent, interline space, and paragraph space); however, the sections that user should modify are only 2), 4) and 5).

``` tex
%!TeX root=./thesisStructure.tex
%Add here the packages, variables, definitions, environments and specific elements created only for your thesis

% 1 Code listing setup
%------------------
\RequirePackage{listings}
\RequirePackage{xcolor}
\definecolor{gray97}{gray}{0.97}
\definecolor{gray45}{gray}{0.45}
\newcaptionname{spanish}{\lstlistlistingname}{Sección de Códigos}
\renewcommand{\lstlistingname}{Código}
\renewcommand{\lstlistlistingname}{Códigos}
\lstset{ frame=Ltb,
     framerule=0pt,
     aboveskip=0.2cm,
     framextopmargin=3pt,
     framexbottommargin=3pt,
     framexleftmargin=0.4cm,
     framesep=0pt,
     rulesep=.4pt,
     backgroundcolor=\color{gray97},
     rulesepcolor=\color{black},
     %
     stringstyle=\ttfamily,
     showstringspaces = false,
     %basicstyle=\small\ttfamily,
     %basicstyle=\small,
     commentstyle=\color{gray45}\ttfamily,
     keywordstyle=\bfseries,
     %
     numbers=left,
     numbersep=15pt,
     numberstyle=\tiny,
     numberfirstline = false,
     breaklines=true,
   }

% 2 Commands and variables
% 2.1 Thesis's title page config
%------------------
\newcommand{\myTitle}{Un Título de la Tesis no Muy Complicado y Largo Pero Capaz de Definir Concretamente}
\newcommand{\mySubtitle}{Caso de Estudio a Nivel Maestría}
\newcommand{\myDegree}{Maestría en Ciencias en Ingeniería Electrónica}
% 2.2 Autores:
\newcommand{\myName}{Gerardo Marx Chávez-Campos}
\newcommand{\myNumber}{D01120294}
%\newcommand{\myPartner}{Otro autor}
%----------------
% 2.3 Mesa de revisión
%Director:
\newcommand{\myProf}{Homer Simpson}
%Codirector:
\newcommand{\myOtherProf}{James Clerk Maxwell \xspace}
%Revisor 1:
\newcommand{\mySupervisor}{Piere Simon Laplace\xspace}
%Revisor 2:
\newcommand{\myOtherSupervisor}{Jean-Baptiste Joseph Fourier\xspace}
%--------------
% 2.4 Datos del instituto:
\newcommand{\myFaculty}{Maestría en Ingeniería Electrónica}
\newcommand{\myDepartment}{División de Estudios de Posgrado e Investigación}
\newcommand{\myUni}{Instituto Tecnológico de Morelia}
\newcommand{\myLocation}{Morelia, Michoacán, México}
\newcommand{\myTime}{Abril 2021}
\newcommand{\myThesisVersion}{Rev 2.0}

%---------------------
% 3	USEFUL COMMANDS
%---------------------
\newcommand{\ie}{i.\,e.}
\newcommand{\Ie}{I.\,e.}
\newcommand{\eg}{e.\,g.}
\newcommand{\Eg}{E.\,g.}


%-------------------------
% 4. Required packages for
% figures, plots, subfigures
%-------------------------
\usepackage{float}
\usepackage{subfigure}
\usepackage{tikz}
\usepackage{booktabs} %Beautiful tables
\usepackage{todonotes} %Todo list for comments
\usepackage[version-1-compatibility]{siunitx} %easy writting of SI units
\usepackage{pgfplots}
\pgfplotsset{compat=1.10}
\decimalpoint %Decimal point enable
\usepackage[acronym]{glossaries}
%-------------------------
% 5. setting space for indentation
% space between paragraphs and
% baseline.
% Uncomment to set parameters
%-------------------------
% \setlength{\parindent}{4em}
\setlength{\parskip}{1em}
%\renewcommand{\baselinestretch}{2.0} % Interlineado
```

Thus, if you require to change the thesis' title modify `\myTitle` definition on section *2.1*. If you need to change your data as an author modify `\myname` on section *2.2*, and the same foe the other options as the reviewing group (*2.3*), and institution (*2.4*). 

On the other hand, if you want to add new packages to your Protocol, you can added on the main file; the `thesisStructure.tex` file. However, to maintain a clean code you should add on the `configuration` file, specifically on section *4*.

Finally to set specific values of separation for tabulation, paragraphs or text separation between text(interline), please modify section *5*. Here you can use several measurement units as `em`, `cm` , `in` or lines `2`(just a number). E.g:

``` tex
\setlength{\parindent}{4em}
\setlength{\parskip}{1cm}
\renewcommand{\baselinestretch}{2.0} % Interlineado
```

### `glossary-entries.tex` file ###
This file includes each entry for acronyms and glossary entries, the syntax of each entry is shown below:

``` tex
\makeglossaries
\newglossaryentry{latex}
{
    name=latex,
    description={Es un lenguaje de marcado o sintaxis especialmente diseñado para documentos científicos}
}

\newglossaryentry{maths}{
	name=matemáticas,
  description={Las matemáticas son sólo una aproximación a la realidad de la vida}}

\newglossaryentry{formula}{
	name=formula,
	description={A mathematical expression}}


\newacronym{ecm}{ECM}{Error Cuadrático Medio}

\newacronym{ls}{LS}{Mínimos Cuadrados, \textit{Least Squares}}
```

To learn how to call an entry on the code, see the code on `Cahpter02.tex`.

## 2) Front Matter ##
Explain this:
``` tex
% 2)Front Matter:
\pagenumbering{roman} % Roman page numbering 
\input{precontent} %Includes titlepage, dedication, Foreword, abstract, publication, acknowledgement
\include{FrontBackMatter/Contents} % Contents, list of figures/tables/listings and acronyms
\pagenumbering{arabic} % Arabic page numbering
```

## Chapters

## Apendix

## including images 

# The `configuration` file

# Defined variables

# Titlepage

# Glossary 



# References