From f5fb820f0ef2f02c143b7fc260f464851a43e8a1 Mon Sep 17 00:00:00 2001
From: Gerardo Marx <gmarx_cc@itmorelia.edu.mx>
Date: Fri, 11 Sep 2020 23:29:30 -0500
Subject: [PATCH] auctex & pdftools on ubuntu

---
 .gitignore                   |   4 ++
 Readme.md                    |  15 +++++
 config/.emacs                | 114 +++++++++++++++++------------------
 docker/emacs/Dockerfile      |   4 +-
 examples/latex-test/main.aux |   1 -
 examples/latex-test/main.log |  69 ---------------------
 examples/latex-test/main.pdf | Bin 19184 -> 0 bytes
 examples/latex-test/main.tex |  17 ++++++
 scientific-emacs             |  11 +++-
 9 files changed, 104 insertions(+), 131 deletions(-)
 delete mode 100644 examples/latex-test/main.aux
 delete mode 100644 examples/latex-test/main.log
 delete mode 100644 examples/latex-test/main.pdf

diff --git a/.gitignore b/.gitignore
index 72f8980..77a77ed 100644
--- a/.gitignore
+++ b/.gitignore
@@ -15,3 +15,7 @@ config/.cache
 config/.zshrc.pre-oh-my-zsh
 .DS_Store
 dump.rdb
+*.aux
+*.log
+*.synctex.gz
+*.blg
diff --git a/Readme.md b/Readme.md
index d88d763..fa82b03 100644
--- a/Readme.md
+++ b/Readme.md
@@ -1,5 +1,20 @@
 # Readme 
 
+Write here about container
+
+# How to install
+1. Clone this repository:
+`git clone xxxx`
+2. Build the container using: 
+`docker build -t gmarxcc/scientific-emacs:0.1 docker/emacs/`
+3. Run the container to test:
+`docker run --rm -it gmarxcc/scientific-emacs:0.1`
+4. Run an Ubuntu command like `ls`
+
+Done, you are doing great!
+
+# Executing emacs
+
 To get the ip address
 '''
 open -a xquartz
diff --git a/config/.emacs b/config/.emacs
index 42f20b0..24da3d1 100644
--- a/config/.emacs
+++ b/config/.emacs
@@ -93,45 +93,43 @@
   :bind
   ("C-=" . er/expand-region)
   ("C--" . er/contract-region))
+
 ;; latex
-(use-package tex
-  :defer t
-  :ensure auctex
-  :init
-  (progn
-    (setq-default TeX-master nil) ; Query for master file.
-    (setq TeX-auto-save t) ; Enable parse on save.
-    (setq TeX-save-query nil)
-    ;;(setq TeX-command-force "LaTex")
-    (setq latex-run-command "pdflatex")
-    (setq TeX-parse-self t) ; Enable parse on load.
-    (setenv "PATH" (concat (getenv "PATH") ":/Library/TeX/texbin/"))
-    (setq exec-path (append exec-path '("/Library/TeX/texbin/")))
-    ;; pdf-tools configuration
-    (setq TeX-PDF-mode t)
-    (add-hook 'TeX-after-compilation-finished-functions
-     	    #'TeX-revert-document-buffer)
-    (setq TeX-view-program-selection '((output-pdf "PDF Tools"))
-     	 TeX-source-correlate-start-server t)
-    (setq pdf-info-epdfinfo-program "/usr/local/bin/epdfinfo")
-    (add-to-list 'auto-mode-alist '("\\.pdf\\'" . pdf-view-mode))
-    (add-hook 'pdf-view-mode-hook
-     	      (lambda () (pdf-tools-enable-minor-modes)))
-    (setq LaTeX-includegraphics-read-file 'LaTeX-includegraphics-read-file-relative)
-    )
-  :config
-  (add-hook 'LaTeX-mode-hook
-            (lambda ()
-              ;;(rainbow-delimiters-mode)
-              ;;(company-mode)
-              ;;(smartparens-mode)
-              (turn-on-reftex)
-              (setq reftex-plug-into-AUCTeX t)
-              (reftex-isearch-minor-mode)
-              (setq TeX-PDF-mode t)
-              (setq TeX-source-correlate-method 'synctex)
-              (setq TeX-source-correlate-start-server t)))
-  )
+;; (use-package tex
+;;   :defer t
+;;   :ensure auctex
+;;   :init
+;;   (progn
+;;     (setq-default TeX-master nil) ; Query for master file.
+;;     (setq TeX-auto-save t) ; Enable parse on save.
+;;     (setq TeX-save-query nil)
+;;     (setq LaTeX-includegraphics-read-file 'LaTeX-includegraphics-read-file-relative)
+;;     (custom-set-variables '(LaTeX-command "latex -synctex=1"))
+;;     ;;(setq TeX-command-force "LaTex")
+;;     ;;(setq latex-run-command "pdflatex")
+;;     (setq TeX-parse-self t) ; Enable parse on load.
+;;     (setenv "PATH" (concat (getenv "PATH") ":/Library/TeX/texbin/"))
+;;     (setq exec-path (append exec-path '("/Library/TeX/texbin/")))
+;;     ;; pdf-tools configuration
+;;     (setq TeX-PDF-mode t)
+;;       (add-hook 'TeX-after-compilation-finished-functions
+;; 	    #'TeX-revert-document-buffer)
+;;     (setq TeX-view-program-selection '((output-pdf "PDF Tools"))
+;; 	 TeX-source-correlate-start-server t)
+;;     (setq pdf-info-epdfinfo-program "/usr/bin/epdfinfo")
+;;     (add-to-list 'auto-mode-alist '("\\.pdf\\'" . pdf-view-mode))
+;;     (add-hook 'pdf-view-mode-hook
+;; 	      (lambda () (pdf-tools-enable-minor-modes))) 
+;;     )
+  ;; :config
+  ;; (add-hook 'LaTeX-mode-hook
+  ;;           (lambda ()
+  ;;             (company-mode)
+  ;;             (turn-on-reftex)
+  ;;             (setq reftex-plug-into-AUCTeX t)
+  ;;             (reftex-isearch-minor-mode))
+  ;; )
+  
 ;; pdf-tools
 (use-package pdf-tools
   :ensure t
@@ -139,25 +137,9 @@
   :magic ("%PDF" . pdf-view-mode)
   :config
    (custom-set-variables
-     '(pdf-tools-handle-upgrades nil))
-  )
-
-
-
-;; -+-+-+-+-+-+-+
-;; startup config
-(setq inhibit-startup-message t) ;;inhibit startup
-(show-paren-mode 1) ;; parenthesis match 
-(tool-bar-mode -1) ;; no tool-bar
-(menu-bar-mode -1) ;; menu-bar disable  
-(global-hl-line-mode +1) ;; highlith current line
-(delete-selection-mode +1) ;; deletes selected text and replace it
-(scroll-bar-mode -1)
-;; Set default font:
-(add-to-list 'default-frame-alist
-	     '(font . "DejaVu Sans Mono-16"))
-(fset 'yes-or-no-p 'y-or-n-p) ;; Ask y/n instead of yes/no
-(add-hook 'prog-mode-hook 'display-line-numbers-mode) ;; display line number when programming
+     '(pdf-tools-handle-upgrades nil)) 
+   )
+;; ----------
 ;; rextex
 (use-package reftex
   :ensure t
@@ -178,6 +160,24 @@
 
 
 
+;; -+-+-+-+-+-+-+
+;; startup config
+(setq inhibit-startup-message t) ;;inhibit startup
+(show-paren-mode 1) ;; parenthesis match 
+(tool-bar-mode -1) ;; no tool-bar
+(menu-bar-mode -1) ;; menu-bar disable  
+(global-hl-line-mode +1) ;; highlith current line
+(delete-selection-mode +1) ;; deletes selected text and replace it
+(scroll-bar-mode -1)
+;; Set default font:
+(add-to-list 'default-frame-alist
+	     '(font . "DejaVu Sans Mono-16"))
+(fset 'yes-or-no-p 'y-or-n-p) ;; Ask y/n instead of yes/no
+(add-hook 'prog-mode-hook 'display-line-numbers-mode) ;; display line number when programming
+;; -+-+-+-+-+-+-+-
+
+
+
 (custom-set-variables
  ;; custom-set-variables was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
diff --git a/docker/emacs/Dockerfile b/docker/emacs/Dockerfile
index 9fad517..be0f51d 100644
--- a/docker/emacs/Dockerfile
+++ b/docker/emacs/Dockerfile
@@ -12,7 +12,7 @@ RUN apt-get update \
 # installing texlive base with pdflatex utility:
 RUN apt-get -y install \
 texlive-latex-base \
-texlive-latex-recommended \
+texlive-latex-extra \
 texlive-pictures \
 texlive-science \
 texlive-bibtex-extra
@@ -25,6 +25,8 @@ curl \
 aspell \
 vim \
 python3 \
+elpa-pdf-tools \
+auctex \
 zsh
 
 # oh-my-zshell
diff --git a/examples/latex-test/main.aux b/examples/latex-test/main.aux
deleted file mode 100644
index f23e546..0000000
--- a/examples/latex-test/main.aux
+++ /dev/null
@@ -1 +0,0 @@
-\relax 
diff --git a/examples/latex-test/main.log b/examples/latex-test/main.log
deleted file mode 100644
index 11cc865..0000000
--- a/examples/latex-test/main.log
+++ /dev/null
@@ -1,69 +0,0 @@
-This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2020.8.31)  31 AUG 2020 05:56
-entering extended mode
- restricted \write18 enabled.
- %&-line parsing enabled.
-**\nonstopmode\input main.tex
-(./main.tex (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
-Document Class: article 2019/12/20 v1.4l Standard LaTeX document class
-(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo
-File: size10.clo 2019/12/20 v1.4l Standard LaTeX file (size option)
-)
-\c@part=\count167
-\c@section=\count168
-\c@subsection=\count169
-\c@subsubsection=\count170
-\c@paragraph=\count171
-\c@subparagraph=\count172
-\c@figure=\count173
-\c@table=\count174
-\abovecaptionskip=\skip47
-\belowcaptionskip=\skip48
-\bibindent=\dimen134
-)
-(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def
-File: l3backend-pdfmode.def 2020-02-03 L3 backend support: PDF mode
-\l__kernel_color_stack_int=\count175
-\l__pdf_internal_box=\box45
-)
-(./main.aux)
-\openout1 = `main.aux'.
-
-LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 2.
-LaTeX Font Info:    ... okay on input line 2.
-LaTeX Font Info:    External font `cmex10' loaded for size
-(Font)              <7> on input line 3.
-LaTeX Font Info:    External font `cmex10' loaded for size
-(Font)              <5> on input line 3.
- [1
-
-{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (./main.aux) ) 
-Here is how much of TeX's memory you used:
- 365 strings out of 483107
- 6183 string characters out of 5964630
- 231847 words of memory out of 5000000
- 15473 multiletter control sequences out of 15000+600000
- 532338 words of font info for 24 fonts, out of 8000000 for 9000
- 59 hyphenation exceptions out of 8191
- 25i,4n,19p,158b,97s stack positions out of 5000i,500n,10000p,200000b,80000s
-</usr/share/
-texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive
-/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
-Output written on main.pdf (1 page, 19184 bytes).
-PDF statistics:
- 16 PDF objects out of 1000 (max. 8388607)
- 10 compressed objects within 1 object stream
- 0 named destinations out of 1000 (max. 500000)
- 1 words of extra memory for PDF output out of 10000 (max. 10000000)
-
diff --git a/examples/latex-test/main.pdf b/examples/latex-test/main.pdf
deleted file mode 100644
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diff --git a/examples/latex-test/main.tex b/examples/latex-test/main.tex
index f89b06a..b99106e 100644
--- a/examples/latex-test/main.tex
+++ b/examples/latex-test/main.tex
@@ -1,4 +1,21 @@
 \documentclass{article}
+\usepackage{graphicx}
+\usepackage{lipsum}
 \begin{document}
 Hello \LaTeX{}.
+
+\section{Introduction}
+\label{sec:intro}
+
+
+\begin{figure}[htb]
+  \centering
+  \includegraphics
+  \caption{Test}
+\end{figure}
 \end{document}
+
+%%% Local Variables:
+%%% mode: latex
+%%% TeX-master: t
+%%% End:
diff --git a/scientific-emacs b/scientific-emacs
index 649ac8c..9497e35 100755
--- a/scientific-emacs
+++ b/scientific-emacs
@@ -3,12 +3,17 @@
 ip=$(ifconfig en0 | grep inet | awk '$1=="inet" {print $2}')
 xhost + $ip
 echo 'checking redis ...'
-if [ "$(docker container inspect -f '{{.State.Status}}' this_redis)" = "running" ]; then 
+state=$(docker container inspect -f '{{.State.Status}}' this_redis) 
+echo "$state"
+if  [ $state = "exited" ]; then 
 	echo 'starting redis'
 	docker start this_redis
+elif [ $state = "running" ]; then 
+	echo 'stopping redis...'
+	docker stop  this_redis
+	docker start this_redis 	
 else
-	echo 'running redis...'
- 	docker run --name this_redis redis
+ 	docker run -d --name this_redis redis
 fi
 
 # scientific